[Matthias Schiffer: fix up start/stop order and file permissions]

This allows the script to be minified as well as being checked by
luacheck.

The logic is based on the previously used shell script implementation.

Co-Authored-By: Robin Weiligmann <admin@robwei.me>

Signed-off-by: Jan-Tarek Butt <tarek@ring0.de>

In addition to significant internal differences in check_site_lib.lua (in
particular unifying error handling to a single place for the upcoming
multi-domain support), this changes the way fields are addressed in site
check scripts: rather than providing a string like 'next_node.ip6', the
path is passed as an array {'next_node', 'ip6'}.

Other changes in site check scripts:
* need_array and need_table now pass the full path to the sub fields to the
subcheck instead of the key and value
* Any check referring to a field inside a table implies that all higher
levels must be tables if they exist: a check for {'next_node', 'ip6'} adds
an implicit (optional) check for {'next_node'}, which allows to remove many
explicit checks for such tables

Some files have received some additional refactoring.

The generic upgrade script is moved to run after the more specific scripts.
In addition, the script will now remove the configuration sections of
uninstalled VPN packages, so both positive and negative changes of the
default enable state can be migrated correctly.

Based-on-patch-by: Cyrus Fox <cyrus@lambdacore.de>
Fixes: #1187